Quantum Theory Of Atoms In Molecules Research Articles

Comparison of Cu3, Cu5, and Cu7 clusters as potential antioxidants: A theoretical quest.

Herein, we compare and contrast the dual roles of Cun clusters (n = 3, 5, and 7 atoms) in scavenging or generating RO• free radicals from ROH at the theoretical levels (where R = H, methyl, ethyl, n-propyl, i-propyl, n-butyl, t-butyl, and phenyl). This investigation is performed in water media to mimic the actual environment in the biological system. In the presence of the Cun clusters, bond dissociation energy (BDE) of RO-H and R-OH is reduced. This is clear evidence for the increased possibility of both the RO-H and R-OH bonds breakage and scavenging of RO• radicals. The nature of anchoring bonds responsible for the interaction of Cun clusters with ROH and RO• are interpreted using the quantum theory of atoms in molecules (QTAIM) and the natural bond orbital (NBO) analysis. The DFT results indicate that the O•⋅⋅⋅•Cu bond is stronger and has more covalent character in RO•⋅⋅⋅•Cun radical complexes than in ROH⋅⋅⋅•Cun. Therefore, the interactions of Cun clusters with RO• radicals (antioxidant) are more pronounced than their interactions with ROH non-radicals (pro-oxidant). The GAMESS software package was utilized in this paper. The B3LYP and M06 functions with the 6-311 +  + G(d,p), and LANL2DZ/SDD basis sets was used to perform the important geometrical parameters of RO•⋅⋅⋅•Cun and ROH⋅⋅⋅•Cun, binding energy (Eb), and bond dissociation energy (BDE).

How electrons still guard the space: Electron number distribution functions based on QTAIM∩ELF intersections.

Despite the importance of the one-particle picture provided by the orbital paradigm, a rigorous understanding of the spatial distribution of electrons in molecules is still of paramount importance to chemistry. Considerable progress has been made following the introduction of topological approaches, capable of partitioning space into chemically meaningful regions. They usually provide atomic partitions, for example, through the attraction basins of the electron density in the quantum theory of atoms in molecules (QTAIM) or electron-pair decompositions, as in the case of the electron localization function (ELF). In both cases, the so-called electron distribution functions (EDFs) provide a rich statistical description of the electron distribution in these spatial domains. Here, we take the EDF concept to a new fine-grained limit by calculating EDFs in the QTAIM ∩ ELF intersection domains. As shown in AHn systems based on main group elements, as well as in the CO, NO, and BeO molecules, this approach provides an exquisitely detailed picture of the electron distribution in molecules, allowing for an insightful combination of the distribution of electrons between Lewis entities (such as bonds and lone pairs) and atoms at the same time. Besides mean-field calculations, we also explore the impact of electron correlation through Hartree-Fock (HF), density functional theory (DFT) (B3LYP), and CASSCF calculations.

Selective Synthesis of Functionalized 3(2H)‐Furanones via Tandem Michael Addition/Rearrangement/Cyclization Reaction of Aliphatic Alkynones: A Combined Experimental and Theoretical Study

AbstractA novel catalyst‐ and solvent‐controlled dimerization of aliphatic alkynones through tandem Michael addition/rearrangement/cyclization sequence has been developed. The elaborated protocol provides a convenient chemo‐, regio‐ and stereoselective access to rare 3(2H)‐furanones decorated with 2‐exo‐methylene and 4‐ethenyl functionalities. A comprehensive density functional theory (DFT) study of possible reaction mechanism including ab initio molecular dynamics (AIMD) simulations and quantum theory of atoms in molecules (QTAIM) analysis of various substrate/catalyst/solvent complexes has revealed the Janus‐like behavior of the employed sodium tert‐butoxide/toluene system that is responsible both for the chemoselectivity of the initial addition step and the inhibition of the final cyclization step.

Cooperativity between Intermolecular Hydrogen and Carbon Bonds in ZY···CH3CN/CH3NC···HX Trimers (ZY = H2O, H2S, HF, HCl, HBr, NH3, and H2CO; HX = HF, HCl, and HBr).

Hydrogen-bonding and carbon-bonding interactions are widespread in nature. We studied the cooperativity between these interactions in 42 trimeric complexes ZY···CH3CN/CH3NC···HX, where ZY molecules are H2O, H2S, HF, HCl, HBr, NH3, and H2CO, and HX molecules are HF, HCl, and HBr. Acetonitrile (CH3CN) and isoacetonitrile (CH3NC) act as hydrogen bond acceptors as well as carbon bond donors in these trimers. Various theoretical methods, such as electronic structure calculations, quantum theory of atoms in molecule (QTAIM), natural bond orbital (NBO), and reduced density gradient analysis, are employed to study these trimers, and the results are compared with the corresponding ZY···CH3CN/CH3NC and CH3CN/CH3NC···HX dimers. Electronic structure calculations are performed at the second-order Mo̷ller-Plesset perturbation theory using the 6-311++G(2d,2p) basis set. We show that both the interactions act synergistically in these trimers leading to an increase in their bond strength as compared to the strength in the individual dimers. The cooperative energies for these trimers are in the range of 0.69 to 3.22 kJ/mol. It is seen that the carbon bonds benefit more from the cooperativity than the hydrogen bonds. The trends of cooperativity and correlations of interaction energies and cooperative energies with relevant QTAIM and NBO parameters are reported.

Theoretical study on the capture of toxic gases by ionic liquids encapsulated in assembled belt[14[pyridine

In the current study, self-assembled belt[14]pyridine (BP) encapsulated IL (tetramethylammonium chloride (TMACl)) is theoretically explored to capture greenhouse gases (GHGs) at B3LYP-D3/6-311G(d,p) level of theory. The encapsulation of TMACl in assembled belt[14]pyridine is thermodynamically feasible as revealed through high interaction energy value of −50.7 kcal/mol. Moreover, the results of capturing of gas molecules (SO2, CO2, CO and CH4) show that attractive forces involved in capturing of gases are strong van der Waals forces i.e., London dispersion forces and electrostatic interactions. The synergic effect of self-assembled belts and ionic liquid results in significantly high interaction energy values ranging from −7.88 to −25.92 kcal/mol for capturing of gas molecules. Furthermore, the interaction between BP-TMACl and gas molecules is studied in detail through natural bond orbital (NBO) analysis. NBO results show the charge transfer between the fragments (BP-TMACl and gases) which is further validated through EDD analysis. The charge shifts towards all of the captured gas molecules but the most prominent change in NBO charges is shown by captured SO2. The successful charge transfer indicates better interaction in the designed systems. Additionally, the type and strength of interactions involved in the process of encapsulation is studied through quantum theory of atoms in molecules (QTAIM) and noncovalent interactions (NCI) analysis. NCI analysis clearly shows that gases are captured by BP-TMACl complex through strong van der Waals forces. However, in capturing of SO2, strong electrostatic attractive forces are also involved. The nature of attractive forces is confirmed through QTAIM analysis. Furthermore, the relation between recovery time and desorption energy of captured gas molecules has been studied. The strongest absorption for SO2 results in prolonged recovery time for it (as compared to the other gas molecules). AIMD analysis is performed to find the dynamical stability of assembled-belts before and after loading ionic liquids along with gases to be captured. These results reveal that assembled-belts are suitable for encapsulation of ionic liquids along with capturing of gases. Overall, the best results are shown for SO2 capture. The study intends to deliver valuable information on the important progress in the environmental-remediation field and we hope our work is going to inspire more investigators to provide novel research on such challenging tasks.

Experimental and theoretical investigation of 1,3-bis(3-hydroxypyridinium)propane dibromide dihydrate, tetrabromozincate hydrate, and tetrabromocuprate

Three gemini hydroxypyridine salts: 1,3-bis(3-hydroxypyridinium)propane dibromide dihydrate (1), 1,3-bis(3-hydroxypyridinium)propane tetrabromozincate hydrate (2), and 1,3-bis(3-hydroxypyridinium)propane tetrabromocuprate (3) were synthesized and characterized by X-ray diffraction, FTIR, Raman, NMR, and DFT methods. The dibromide salt (1) crystallizes with two water molecules. One of the two bromide anions is connected to the hydroxyl group of one pyridinium cation moiety through the O(10)-H(10)···Br(2)− hydrogen bond of 3.146(2) Å, while the other bromide anion, Br(1)− is surrounded by three water molecules. In 1,3-bis(3-hydroxypyridinium)propane tetrabromozincate (2) the water molecule acts as a bridge between the hydroxypyridinium cation and the tetrabromozincate anion, while the tetrabromocuprate anion interacts directly with the hydroxypyridinium cation. The molecular structures of the studied 1,3-bis(3-hydroxypyridinium)propane derivatives 1a, 2a, and 3a were optimized using the APF-D/6–311++G(d,p) method. The optimized structure of salt 1a resembles the crystal structure, while in salts 2a and 3a the structure of 1,3-bis(3-hydroxypyridinium)propane dication is bent to the U-form and the tetrabromomethallate anion is located in a niche. The significant role of the intermolecular interactions and hydrogen bonds was revealed based on IR spectra. The interpretation of 1H and 13C NMR spectra in DMSO-d6 was based on 2D experiments. The quantum theory of atoms in molecules (QTAIM) was employed to classify the strength of hydrogen bonds in salts 1, 2, and 3. Based on the σ-hole concept, intermolecular interactions in 2 and 3 were described.

Structural, Theoretical and Biological Studies on Cu2+ and Co2+ Complexes of New Thiosemicarbazone Ligands

Two sets of Cu2+, and Co2+ complexes of two 4 – Pyridyl thiosemicarbazone derivatives ligands symbolized by (H3L1), and (H3L2), were synthesized and examined utilizing different analytical, and spectroscopic techniques such as (FT-IR, Elemental Analysis, Magnetic studies, PXRD, UV-Vis, and GC-MS). Thermal stability along with kinetic parameters of both Co2+ complexes were studied. 1H NMR technique was used to confirm the structures of both ligands. The proposed geometries of complexes were recognized by density function theory (DFT) calculations using Material software. Additionally, Quantum theory of atoms in molecules (QTAIM) topological analyses for both ligands were obtained using Multiwfn software. The cyclic voltammogram revealed that copper ions are electroactive and exhibited two reduction waves. Fluorescence studies for both ligands showed a direct increase in the intensity of emissions because of increasing Co2+ concentration in solution. Moreover, several biological evaluations were carried out for all six compounds to evaluate their potential use as biological agents, including antioxidant activity using 2,2′-azino-bis(3-ethylbenzothiazoline-6-sulfonic acid (ABTS) radical scavenging approach, anti-microbial activity against Staphylococcus aureus, Escherichia coli, and Candida albicans, DNA degradation activity, in addition to anticancer activity, along with molecular docking theoretical study against MCF-7 breast cancer cell line to determine the compounds ability to act as antitumor. It was found that the investigated compounds (especially the free ligands) have beneficial effects such as antimicrobial, antitumor, and DNA degradation agents. Furthermore, Co2+ complex (2) has the highest ABTS scavenging activity.

Supramolecular assembly in Cu(II) and Zn(II) compounds with pyridine and anthraquinone-1,5-disulfonate: Experimental and theoretical analysis

Two new multi-component coordination compounds of Cu(II) and Zn(II) viz. [Cu(py)2(H2O)4]ADS·2H2O (1) and [Zn(4-CNpy)2(H2O)4]ADS·2H2O (2) (py = pyridine, 4-CNpy = 4-cyanopyridine, ADS = anthraquinone-1,5-disulfonate) have been synthesized in aqueous media at room temperature and characterized using elemental and spectroscopic analyses (FT-IR, electronic), TGA and single crystal X-ray diffraction techniques. Both the compounds crystallize as metal–organic multi-component compounds containing complex cationic moieties along with uncoordinated anionic ADS moieties in the crystal structures. Crystal structure analysis of 1 reveals the stabilisation of the layered assembly of the compound assisted by CH⋯O, OH⋯O hydrogen bonding and π-stacking interactions. Antiparallel CN⋯CN and aromatic π-stacking interactions provide rigidity to the crystal structure of compound 2. In addition, enclathration of lattice water molecules within the supramolecular cavity of 2 provides additional reinforcement to the crystal structure. We have carried out theoretical investigations to analyze π-stacking, H-bonding and antiparallel CN···CN non-covalent interactions observed in the compounds using DFT calculations, quantum theory of atoms in molecules (QTAIM) and non-covalent interaction (NCI) plot index computational tools. The binding energies of the supramolecular assemblies are quite significant due to the ion-pair nature of the interactions which lack directionality; however, the aforementioned weaker non-covalent interactions play crucial roles in the final arrangement of molecules in the solid state due to their directional nature.

A combined experimental and theoretical approach for doxycycline sensing using simple fluorescent probe with distinct fluorescence change in wide range of interferences

Overuse of doxycycline (DOXY) can cause serious problems to human health, environment and food quality. So, it is essential to develop a new sensing methodology that is both sensitive and selective for the quantitative detection of DOXY. In our current research, we synthesized a simple fluorescent probe 4,4′-bis(benzyloxy)-1,1′-biphenyl (BBP) for the highly selective detection of doxycycline by through fluorescence spectroscopy. The probe BBP displayed ultra-sensitivity towards doxycycline due to Forster resonance energy transfer (FRET). Fluorescence spectroscopy, density functional theory (DFT), 1H NMR titration, UV–Vis, and Job's plot were used to confirm the sensing mechanism. The charge transfer between the probe and analyte was further examined qualitatively by electron density differences (EDD) and quantitively by natural bond orbital (NBO) analyses. Whereas the non-covalent nature of probe BBP towards DOXY was verified by theoretical non-covalent interaction (NCI) analysis as along with Bader's quantum theory of atoms in molecules (QTAIM) analysis. Furthermore, probe BBP was also practically employed for the detection of doxycycline in fish samples, pharmaceutical wastewater and blood samples.

Colorimetric detection of clotrimazole environmental pollutant using a newly developed chemosensor; an experimental and theoretical study

ABSTRACT Clotrimazole (CTZ), as an antifungal medication, is used to treat dermatological infections in humans, and to remove fungal infections from plants in agriculture, but its widespread usage has led to pharmaceutical pollution and environmental concerns. In this study, a new bromopyrogallol red (BPR) and N i 2 + based colorimetric sensor was developed for the selective and sensitive detection of CTZ. The BPR-Ni complex showed a clear colour change from purple to violet in the presence of CTZ, and a significant change was observed in the UV-Vis spectrum. The stoichiometric ratio of 1:1 between BPR and N i 2 + was determined using the Benesi-Hildebrand method. DFT and time-dependent DFT (TD-DFT) were applied to identify the molecular and electronic structures of the BPR, BPR-Ni, and BPR-Ni-CTZ in ground and excited states. The nature of electronic excitations and charge transfers was evaluated using the natural transition orbitals (NTO). The NTO analysis reveals that the Ni atom facilitates the charge transfer process between BPR and CTZ and improves the sensitivity of the chemosensor. The quantum theory of atoms in molecules (QTAIM) was employed to determine the nature of interactions between BPR, N i 2 + , and CTZ. This study paves the way for the detection of environmentally harmful pharmaceutical pollution using simple but effective colorimetric sensors.

An experimental and theoretical study on the molecular interactions of N-aromatic L-proline in the condensed phase

Intermolecular interactions, such as halogen bonding, π-π stacking, F…π interactions, and anion-π interactions, play pivotal roles in the fields of chemistry, materials science, and biological technology. In this study, N-aromatic L-proline and its fluorinated derivatives were chosen as exemplars. X-ray diffraction and NMR techniques were employed to investigate these interactions in both solid-state and solution phases respectively. Theoretical investigations encompassing geometry optimization along with QTAIM (Quantum Theory of Atoms in Molecule) and IGMH (Independent Gradient Model based on the Hirshfeld partition) analyses provided profound insights into the intermolecular interactions. Parameters obtained from X-ray diffraction analysis of single crystals provide compelling evidence for F…F interaction with intermolecular F…F distances measuring 2.879 Å and 3.125 Å in compounds 2 and 3 crystal structures respectively. QTAIM and IGMH analyses indicate that F…π contacts significantly contribute to the formation of these two fluorinated crystals while H-bonding and CH…π contacts predominantly shape the crystal structure of the non-fluorinated L-proline derivative.

Fascinating inclusion of metal–organic complex moieties in dinuclear Mn(II) and Zn(II) compounds involving pyridinedicarboxylates and phenanthroline: Experimental and theoretical studies

In the present study, we have reported the synthesis of two new dinuclear Mn(II) and Zn(II) metal–organic compounds, [Mn(2,5-PDC)(phen)2][Mn(phen)2(H2O)2]2Cl·10H2O (1) and [Zn(phen)3][Zn(2,6-PDC)2]·11.5H2O (2) (where, 2,5-PDC = 2,5-pyridinedicarboxylate, 2,6-PDC = 2,6-pyridinedicarboxylate, phen = 1,10-phenanthroline) at room temperature which have been characterized by elemental analysis, TGA, spectroscopic (FTIR, electronic) and single crystal X-ray diffraction techniques. A fascinating chloride-water supramolecular cluster in 1 and (H2O)13 H-bonded cluster in 2 along with π-stacked assemblies stabilize the solid state structures. The most interesting aspect of the crystal structure of 1 is the inclusion of complex cationic moieties within the infinite self-assembled chloride-water cluster. Similarly the inclusion of cationic complex moieties in compound 2 inside the supramolecular cavity formed by the anionic complex provides rigidity to the crystal structure. DFT calculations, molecular electrostatic potential (MEP) surface analysis, quantum theory of atoms-in-molecules (QTAIM) and the non-covalent index plot (NCI plot) analysis were performed to investigate the supramolecular assemblies of the compounds. The studies reveal that the antiparallel π-stacking interactions are energetically significant synthons for the assemblies. However, the assemblies in 2 have been dominated mostly by Columbic attraction of the cationic and anionic complex moieties.

Unraveling the crystal structure, stability and drug likeness of 1,3,4-oxadiazole derivatives against Myelofibrosis: a combined experimental and computational investigation

Herein, we report the synthesis and characterization of novel 1,3,4-oxadiazole derivatives, 2-methoxybenzyl 5-(4-chlorophenyl)-1,3,4-oxadiazole-2-carboxylate (C1) 2-methoxybenzyl 5-(2-chlorophenyl)-1,3,4-oxadiazole-2-carboxylate (C2), and methoxybenzyl 5-(3-chlorophenyl)-1,3,4-oxadiazole-2-carboxylate (C3) obtained through desulfurative cyclization reaction. The compound C2 was crystallized, and its crystal structure was elucidated using single-crystal X-ray diffraction technique. The Hirshfeld surface analysis was carried out to analyze, visualize and globally appreciate the weak interactions involved in crystal packing. These analyses were complemented by Quantum Theory of Atoms In Molecules (QTAIM) and Reduced Density Gradient (RDG), which allowed us to decipher the nature and types of attractive forces that contribute to maintain the crystal structure of the titled compound. Moreover, the ADME profile of the compound was predicted to assess its drug likeness. Finally, in silico studies were performed to explore the binding affinity of the compounds (C1–3) against Myelofibrosis through molecular docking and molecular dynamic simulations. Communicated by Ramaswamy H. Sarma

A theoretical study on 1H-indole-2,3-dione complexes with lithium, sodium, and potassium cations.

A comparative study of the change in different properties of electronic and structural of the free 1H-indole-2,3-dione molecule and its complexes has been obtained. HOMA analysis was performed to investigate the effects of lithium sodium and potassium cations on the aromaticity of lithium sodium and potassium complexes of 1H-indole-2,3-dione. Several 1H-indole-2,3-dione complexes with lithium, sodium, and potassium cations were optimized at the B3LYP/6-311G(d,p) level. The cation and π interaction has been investigated from different aspects, including interaction energy calculations, charge transfer values, and changes in the aromaticity of the ring upon complexation. The charge transfer and natural population analysis for the complexes were performed with the natural bond orbital (NBO) analysis. The properties of bond critical points in complexes were studied by applying the quantum theory of atoms in molecules (QTAIM). Finally, the aromaticity change of phenyl induced upon complex formation was evaluated by applying the harmonic oscillator model of aromaticity (HOMA). [Li-INa]+ and [[Li-INb]+ were optimized with the wB97XD function using a version of Grimme's D2 dispersion model, and the absorption energy was compared with the calculation made with the B3LYP functional.

On the Existence of Pnictogen Bonding Interactions in As(III) S-Adenosylmethionine Methyltransferase Enzymes.

As(III) S-adenosylmethionine methyltransferases, pivotal enzymes in arsenic metabolism, facilitate the methylation of arsenic up to three times. This process predominantly yields trivalent mono- and dimethylarsenite, with trimethylarsine forming in smaller amounts. While this enzyme acts as a detoxifier in microbial systems by altering As(III), in humans, it paradoxically generates more toxic and potentially carcinogenic methylated arsenic species. The strong affinity of As(III) for cysteine residues, forming As(III)-thiolate bonds, is exploited in medical treatments, notably in arsenic trioxide (Trisenox®), an FDA-approved drug for leukemia. The effectiveness of this drug is partly due to its interaction with cysteine residues, leading to the breakdown of key oncogenic fusion proteins. In this study, we extend the understanding of As(III)'s binding mechanisms, showing that, in addition to As(III)-S covalent bonds, noncovalent O⋅⋅⋅As pnictogen bonding plays a vital role. This interaction significantly contributes to the structural stability of the As(III) complexes. Our crystallographic analysis using the PDB database of As(III) S-adenosylmethionine methyltransferases, augmented by comprehensive theoretical studies including molecular electrostatic potential (MEP), quantum theory of atoms in molecules (QTAIM), and natural bond orbital (NBO) analysis, emphasizes the critical role of pnictogen bonding in these systems. We also undertake a detailed evaluation of the energy characteristics of these pnictogen bonds using various theoretical models. To our knowledge, this is the first time pnictogen bonds in As(III) derivatives have been reported in biological systems, marking a significant advancement in our understanding of arsenic's molecular interactions.

Bistriazolotriazole-tetramine: commendable energetic moiety and cation.

Various 7H,7'H-[6,6'-bi[1,2,4]triazolo[4,3-b][1,2,4]triazole]-3,3',7,7'-tetramine (A) based nitrogen-rich energetic salts were designed and their properties explored. All energetic salts possess relatively high nitrogen content (> 48%), positive heats of formation (> 429kJ/mol) and stability owing to a significant contribution from fused backbone. The cationic component shows a very high heat of formation (2516kJ/mol); therefore, it is highly suitable for enthalpy enhancement in new energetic salts. The cation was paired with the energetic anions nitrate (NO3-), perchlorate (ClO4-), dinitromethanide (CH(NO2)2-), trinitromethanide (C(NO2)3-), nitroamide (NHNO2-), and dinitroamide (N(NO2)2-) to improve oxygen balance and detonation performance. Designed salts show moderate detonation velocities (7.9-8.7 km/s) and pressures (23.8 - 33.1 GPa). The distribution of frontier molecular orbitals, molecular electrostatic surface potentials, QTAIM topological properties, and noncovalent interactions of designed salts were simulated to understand the electronic structures, charge distribution in molecules, hydrogen bonding, and other nonbond interactions. The predicted safety factor (SF) and impact sensitivity (H50) of designed salts suggest their insensitivity to mechanical stimuli. This work explored the 7H,7'H-[6,6'-bi[1,2,4]triazolo[4,3-b][1,2,4]triazole]-3,3',7,7'-tetramine as a suitable cationic component which could be promising and serve exemplarily in energetic materials. The optimization and energy calculations of all the designed compounds were carried out at the B3LYP/6-311 +  + G(d,p) and M06-2X/def2-TZVPP levels, utilizing the Gaussian software package. The molecular surface electrostatic potential, quantum theory of atoms in molecules (QTAIM), reduced density gradient (RDG), and noncovalent interaction (NCI) analysis were performed by employing Multiwfn software. The EXPLO5 (v 7.01) thermochemical code and PILEM web application were used to predict the detonation properties.

A Charge-Charge Flux-Dipole Flux Analysis of Simple Molecular Systems with Halogen Bonds.

The presence of halogen bonds (R-X···B; R = substituent group, X = halogen, and B = Lewis base) provides quite amazing molecular systems for electronic structure investigations, presenting unique characteristics of fundamental relevance to supramolecular chemistry among other areas. Here, we use a double-hybrid approach from Density Functional Theory and triple-ζ basis sets augmented with diffuse functions (B2PLYP/def2-TZVPD) to deal with a large group of simple molecular systems containing halogen bonds (XBs), focusing on geometrical structures, binding energies, harmonic vibrational frequencies, and fundamental infrared intensities. Next, the electron densities and their variations on vibrations are carefully studied with the Quantum Theory of Atoms in Molecules (QTAIM) formalism and the charge-charge flux-dipole flux (CCFDF) model. We notice that the R-X stretching mode usually shows vibrational frequency decrements and infrared intensifications during the XB formation. Such features were also observed in hydrogen bonds, although the explanation for the band strengthening is different. Surprisingly, the most important contribution to these intensity increments due to complexation is now the interaction term between the charge flux and dipole flux (CF × DF). Thus, the use of atomic dipoles is mandatory to fully understand this phenomenon. In fact, the huge charge flux contributions to changes in dipole moment derivatives of R-X stretchings on halogen bonding are no longer accompanied by opposite variations of similar magnitudes in polarizations described by atomic dipole fluxes, which provided nearly unaltered values during the XB formation. Thus, the electronic charge flux direction change that takes place in complexes (from B to R) now reinforces dipole moment derivative terms from such atomic polarizations (mainly from the X atom). This intermolecular charge flux seems to be responsible for the unusual features noticed in the R-X stretching mode with the CCDDF/QTAIM model.

Theoretical Insights into Different Complexation Modes of Dioxovanadium(V) Compounds with Pyridoxal Semicarbazone/Thiosemicarbazone/S-Methyl-iso-thiosemicarbazone Ligands.

Vanadium complexes have gained considerable attention as biologically active compounds. In this contribution, three previously reported dioxovanadium(V) complexes with pyridoxal semicarbazone, thiosemicarbazone, and S-methyl-iso-thiosemicarbazone ligands are theoretically examined. The intermolecular stabilization interactions within crystallographic structures were investigated by Hirshfeld surface analysis. These experimental structures were optimized at the B3LYP-D3BJ/6-311++G(d,p)(H,C,N,O,S)/def2-TZVP(V) level of theory, and crystallographic and optimized bond lengths and angles were compared. High correlation coefficients and low mean absolute errors between these two data sets proved that the selected level of theory was appropriate for the description of the system. The changes in structures and stability were examined by adding explicit solvent molecules. The Quantum Theory of Atoms in Molecules (QTAIM) was employed to analyze the intramolecular interactions with special emphasis on the effect of substituents. A good correlation between electron density/Laplacian and interatomic distance was found. Through molecular docking simulations towards Bovine Serum Albumin (BSA), the binding affinity of complexes was further investigated. The spontaneity of binding in the active position of BSA was shown. Further experimental studies on this class of compounds are advised.

Cavitands based nanocapsule as smart and highly effective vehicle for 5-fluorouracil anti-cancer drug delivery: DFT insights

The nanomaterials have been widely investigated as drug delivery system for a variety of anticancer drugs to limit their adverse effects while transporting to the target site. In the current study, we report the cavitand-based nanocapsules as a drug delivery vehicle for nitrosourea (NU) and fluorouracil (FU) anti-cancer drugs. FU and NU drugs interact with the nanocapsules with the interaction energies in gas phase (solvent) −24.78 kcal/mol (–22.39 kcal/mol) and −21.58 kcal/mol (-20.45 kcal/mol), respectively. The results of Quantum theory of atoms in molecules (QTAIM) and noncovalent index (NCI) analyses indicate that the FU@Capsule and NU@Capsule complexes are mainly stabilized through hydrogen bonding and van der Waals interactions. Electron density difference (EDD) and natural bond order (NBO) analyses reveal that significant amount of charge is transferred from the nanocapsule to drug molecules. Frontier molecular orbital (FMO) analysis also reveals slight reduction in the energy gap. AIMDS analysis shows that cavitand capsules can efficiently carry the anti-cancerous drug to their target site without distorting complexes. The dipole moments and pH effect are studied to understand the drug release mechanism of considered anticancer drugs. The decrease in adsorption energy and increase in interaction distances indicate that anticancer drugs can easily be off-loaded from the carrier (nanocapsule) at the target site due to the low pH of cancerous cells compared to the normal cells. Therefore, cavitand nanocapsule can be employed as an excellent drug delivery carrier in smart targeted drug delivery.

On the role of water in antimony electrodeposition from choline chloride/ethylene glycol/water mixture

Through experimental research and theoretical calculation, it was investigated the effect of water and temperature on the electrodeposition of antimony (Sb) on a platinum (Pt) electrode. The plating solutions were prepared by the addition of 0.05 mol L–1 SbCl3 to the mixtures of choline chloride (ChCl), ethylene glycol (EG) and water (W) in the following molar ratio: 1ChCl:2EG (bath 1), 1ChCl:2EG:0.45 W (bath 2), and 1ChCl:2EG:1.62 W (bath 3). Furthermore, the Sb coatings were electrodeposited at 297 and 338 K. The surface morphologies and crystalline structures of Sb electrodeposits were analysed by scanning electron microscopy (SEM) and X-ray diffraction (XRD), respectively. In addition, to understand the interactions of Sb3+ species with the other components of the plating solution, models were created and calculated using density functional theory (DFT) and quantum theory of atoms in molecules (QTAIM). The results of the voltammetric behaviour of Sb3+ species indicated that the reduction potential was shifted towards more positive values with increasing water content on the electrolyte, indicating that the water catalyses the electrochemical reduction of the Sb3+ species. The values of the diffusion coefficients for the Sb3+ species were calculated by applying the Cottrell equation, which increased with the addition of water and temperature increment. The water content and temperature increase affect the surface morphologies of the Sb electrodeposited coatings, which is attributed to the improvement of Sb electrodeposition rate. Moreover, Sb electrodeposited coatings were successfully obtained without adding a complexing agent, indicating that the procedure adopted for the Sb electrodeposition is environmentally friendly. The XRD results revealed the pure phase Sb films. DFT simulations indicated that the Sb-Cl interaction is stronger, which suggests the formation of Sb-Cl complexes. Adding H2O molecules favours the electron affinity of the systems, and QTAIM results suggested that this additive decreased the electron density of Sb3+ ions.